$ perl -MCPAN -e 'install Statistics::ChiSquare' /usr/lib/perl5/5.8.0/CPAN/Config.pm initialized. CPAN is the world-wide archive of perl resources. It consists of about 100 sites that all replicate the same contents all around the globe. Many countries have at least one CPAN site already. The resources found on CPAN are easily accessible with the CPAN.pm module. If you want to use CPAN.pm, you have to configure it properly. If you do not want to enter a dialog now, you can answer 'no' to this question and I'll try to autoconfigure. (Note: you can revisit this dialog anytime later by typing 'o conf init' at the cpan prompt.) Are you ready for manual configuration? [yes] The following questions are intended to help you with the configuration. The CPAN module needs a directory of its own to cache important index files and maybe keep a temporary mirror of CPAN files. This may be a site-wide directory or a personal directory. First of all, I'd like to create this directory. Where? CPAN build and cache directory? [/home/Matt Evett/.cpan] If you want, I can keep the source files after a build in the cpan home directory. If you choose so then future builds will take the files from there. If you don't want to keep them, answer 0 to the next question. How big should the disk cache be for keeping the build directories with all the intermediate files? Cache size for build directory (in MB)? [10] By default, each time the CPAN module is started, cache scanning is performed to keep the cache size in sync. To prevent from this, disable the cache scanning with 'never'. Perform cache scanning (atstart or never)? [atstart] To considerably speed up the initial CPAN shell startup, it is possible to use Storable to create a cache of metadata. If Storable is not available, the normal index mechanism will be used. Cache metadata (yes/no)? [yes] The next option deals with the charset your terminal supports. In general CPAN is English speaking territory, thus the charset does not matter much, but some of the aliens out there who upload their software to CPAN bear names that are outside the ASCII range. If your terminal supports UTF-8, you say no to the next question, if it supports ISO-8859-1 (also known as LATIN1) then you say yes, and if it supports neither nor, your answer does not matter, you will not be able to read the names of some authors anyway. If you answer no, names will be output in UTF-8. Your terminal expects ISO-8859-1 (yes/no)? [yes] If you have one of the readline packages (Term::ReadLine::Perl, Term::ReadLine::Gnu, possibly others) installed, the interactive CPAN shell will have history support. The next two questions deal with the filename of the history file and with its size. If you do not want to set this variable, please hit SPACE RETURN to the following question. File to save your history? [/home/Matt Evett/.cpan/histfile] Number of lines to save? [100] The CPAN module can detect when a module that which you are trying to build depends on prerequisites. If this happens, it can build the prerequisites for you automatically ('follow'), ask you for confirmation ('ask'), or just ignore them ('ignore'). Please set your policy to one of the three values. Policy on building prerequisites (follow, ask or ignore)? [ask] The CPAN module will need a few external programs to work properly. Please correct me, if I guess the wrong path for a program. Don't panic if you do not have some of them, just press ENTER for those. To disable the use of a download program, you can type a space followed by ENTER. Where is your gzip program? [/usr/bin/gzip] Where is your tar program? [/usr/bin/tar] Where is your unzip program? [/usr/bin/unzip] Where is your make program? [/usr/bin/make] Warning: lynx not found in PATH Where is your lynx program? [] /usr/bin/linx Warning: wget not found in PATH Where is your wget program? [] Warning: ncftpget not found in PATH Where is your ncftpget program? [] Warning: ncftp not found in PATH Where is your ncftp program? [] Where is your ftp program? [/cygdrive/c/WINDOWS/System32/ftp] What is your favorite pager program? [/usr/bin/less] What is your favorite shell? /usr/bin/tcsh Every Makefile.PL is run by perl in a separate process. Likewise we run 'make' and 'make install' in processes. If you have any parameters (e.g. PREFIX, LIB, UNINST or the like) you want to pass to the calls, please specify them here. If you don't understand this question, just press ENTER. Parameters for the 'perl Makefile.PL' command? Typical frequently used settings: PREFIX=~/perl non-root users (please see manual for more hints) Your choice: [] Parameters for the 'make' command? Typical frequently used setting: -j3 dual processor system Your choice: [] Parameters for the 'make install' command? Typical frequently used setting: UNINST=1 to always uninstall potentially conflicting files Your choice: [] Sometimes you may wish to leave the processes run by CPAN alone without caring about them. As sometimes the Makefile.PL contains question you're expected to answer, you can set a timer that will kill a 'perl Makefile.PL' process after the specified time in seconds. If you set this value to 0, these processes will wait forever. This is the default and recommended setting. Timeout for inactivity during Makefile.PL? [0] If you're accessing the net via proxies, you can specify them in the CPAN configuration or via environment variables. The variable in the $CPAN::Config takes precedence. Your ftp_proxy? Your http_proxy? Your no_proxy? You have no /home/Matt Evett/.cpan/sources/MIRRORED.BY I'm trying to fetch one LWP not available CPAN: Net::FTP loaded ok Fetching with Net::FTP: ftp://ftp.perl.org/pub/CPAN/MIRRORED.BY Now we need to know where your favorite CPAN sites are located. Push a few sites onto the array (just in case the first on the array won't work). If you are mirroring CPAN to your local workstation, specify a file: URL. First, pick a nearby continent and country (you can pick several of each, separated by spaces, or none if you just want to keep your existing selections). Then, you will be presented with a list of URLs of CPAN mirrors in the countries you selected, along with previously selected URLs. Select some of those URLs, or just keep the old list. Finally, you will be prompted for any extra URLs -- file:, ftp:, or http: -- that host a CPAN mirror. (1) Africa (2) Asia (3) Central America (4) Europe (5) North America (6) Oceania (7) South America Select your continent (or several nearby continents) [] 5 Sorry! since you don't have any existing picks, you must make a geographic selection. (1) Canada (2) Mexico (3) United States Select your country (or several nearby countries) [] 3 Sorry! since you don't have any existing picks, you must make a geographic selection. (1) ftp://archive.progeny.com/CPAN/ (2) ftp://carroll.cac.psu.edu/pub/CPAN/ (3) ftp://cpan-du.viaverio.com/pub/CPAN/ (4) ftp://cpan-sj.viaverio.com/pub/CPAN/ (5) ftp://cpan.calvin.edu/pub/CPAN (6) ftp://cpan.cse.msu.edu/ (7) ftp://cpan.digisle.net/pub/CPAN (8) ftp://cpan.erlbaum.net/ (9) ftp://cpan.llarian.net/pub/CPAN/ (10) ftp://cpan.mirror.redwire.net/pub/CPAN/ (11) ftp://cpan.nas.nasa.gov/pub/perl/CPAN/ (12) ftp://cpan.netnitco.net/pub/mirrors/CPAN/ (13) ftp://cpan.pair.com/pub/CPAN/ (14) ftp://cpan.teleglobe.net/pub/CPAN (15) ftp://cpan.thepirtgroup.com/ (16) ftp://cpan.uky.edu/pub/CPAN/ 46 more items, hit SPACE RETURN to show them Select as many URLs as you like (by number), put them on one line, separated by blanks, e.g. '1 4 5' [] 6 Enter another URL or RETURN to quit: [] "file:/" doesn't look like an URL at first sight. I'll ignore it for now. You can add it to your /usr/lib/perl5/5.8.0/CPAN/Config.pm later if you're sure it's right. Enter another URL or RETURN to quit: [] 11 2 16 "file:11 2 16/" doesn't look like an URL at first sight. I'll ignore it for now. You can add it to your /usr/lib/perl5/5.8.0/CPAN/Config.pm later if you're sure it's right. Enter another URL or RETURN to quit: [] New set of picks: ftp://cpan.cse.msu.edu/ commit: wrote /usr/lib/perl5/5.8.0/CPAN/Config.pm CPAN: Storable loaded ok LWP not available Fetching with Net::FTP: ftp://cpan.cse.msu.edu/authors/01mailrc.txt.gz Going to read /home/Matt Evett/.cpan/sources/authors/01mailrc.txt.gz CPAN: Compress::Zlib loaded ok LWP not available Fetching with Net::FTP: ftp://cpan.cse.msu.edu/modules/02packages.details.txt.gz Going to read /home/Matt Evett/.cpan/sources/modules/02packages.details.txt.gz Database was generated on Sun, 29 Feb 2004 23:55:14 GMT HTTP::Date not available LWP not available Fetching with Net::FTP: ftp://cpan.cse.msu.edu/modules/03modlist.data.gz Going to read /home/Matt Evett/.cpan/sources/modules/03modlist.data.gz Going to write /home/Matt Evett/.cpan/Metadata Running install for module Statistics::ChiSquare Running make for D/DC/DCANTRELL/Statistics-ChiSquare-0.5.tar.gz LWP not available Fetching with Net::FTP: ftp://cpan.cse.msu.edu/authors/id/D/DC/DCANTRELL/Statistics-ChiSquare-0.5.tar. gz CPAN: Digest::MD5 loaded ok LWP not available Fetching with Net::FTP: ftp://cpan.cse.msu.edu/authors/id/D/DC/DCANTRELL/CHECKSUMS Checksum for /home/Matt Evett/.cpan/sources/authors/id/D/DC/DCANTRELL/Statistics -ChiSquare-0.5.tar.gz ok Scanning cache /home/Matt Evett/.cpan/build for sizes cannot open /home/Matt: no such file Package seems to come without Makefile.PL. (The test -f "/home/Matt Evett/.cpan/build/DCANTRELL000/Makefile.PL" returned false.) Writing one on our own (setting NAME to StatisticsChiSquare) CPAN.pm: Going to build D/DC/DCANTRELL/Statistics-ChiSquare-0.5.tar.gz Writing Makefile for StatisticsChiSquare /usr/bin/make -- OK Running make test No tests defined for StatisticsChiSquare extension. /usr/bin/make test -- OK Running make install Writing /usr/lib/perl5/site_perl/5.8.0/cygwin-multi-64int/auto/StatisticsChiSqua re/.packlist Appending installation info to /usr/lib/perl5/5.8.0/cygwin-multi-64int/perllocal .pod /usr/bin/make install -- OK Matt Evett@csc-79jtl21 /cygdrive/c/Documents and Settings/Matt Evett/My Document s/public_html/BioinformaticsTools/Mastering Perl $